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Synthese-PSM_LARRA/Scripts/pyCreateTh/pyCreateTh.py
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Alex38Lyon 8a54cbfad4 pyCreateTh update
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"""
!############################################################################################
# #
# Script pour convertir des données topographiques des formats #
# .th de Therion (brut, sans les dossiers) #
# .mak ou .dat de compass #
# .tro de visual topo #
# #
# au format th et th2 de Therion #
# by Alexandre PONT (alexandre_pont@yahoo.fr) #
# #
# Définir les différentes variables dans fichier config.ini #
# #
# Usage : python pyCreateTh.py #
# Commandes : pyCreateTh.py --help #
# #
!############################################################################################
Merci à :
- Tanguy Racine pour les scripts https://github.com/tr1813
- Xavier Robert pour les principes de base https://github.com/robertxa
- Xavier Robert pour les scripts de conversion .tro https://github.com/robertxa/pytherion
- Benoit Urruty https://github.com/BenoitURRUTY
Sources documentaires :
- Format des fichiers compass : https://fountainware.com/compass/Documents/FileFormats/FileFormats.htm
Création Alex le 2025 06 09
En cours :
- Exports Tro :
- pas possible de gérer les fichiers tro avec plusieurs entrées / points fixes car pas sauvegardé dans le format tro
- gérer pour ne pas avoir de copie de config.ini
- modifier les coordonnées de km vers m, ajouter les points fixes dans read-me
- Exports TroX
- A créer pour avoir notamment les réseaux à plusieurs entrées
- Exports DAT/MARK
- Attention les Flags '#|L#' posent problèmes (A voir convertisseur PdB vers compass...)
- tester avec les dernières option de la version de DAT (CORRECTION2 et suivants)
- améliorer fonction wall shot pour faire habillage des th2 files, les jointures...
- traiter les series avec 1 ou 2 stations
- PB des cartouches et des échelles pour faire des pdf automatiquement
"""
#################################################################################################
#################################################################################################
import os, re, argparse, shutil, sys, time, math
from os.path import isfile, join, abspath, splitext
from pathlib import Path
import numpy as np
import networkx as nx
import pandas as pd
pd.set_option('future.no_silent_downcasting', True)
from datetime import datetime
from collections import defaultdict
from copy import deepcopy
from alive_progress import alive_bar # https://github.com/rsalmei/alive-progress
from contextlib import redirect_stdout
from Lib.survey import SurveyLoader, NoSurveysFoundException
from Lib.therion import compile_template, compile_file, get_stats_from_log
from Lib.general_fonctions import setup_logger, Colors, safe_relpath, colored_help
from Lib.general_fonctions import load_config, select_file_tk_window, release_log_file, sanitize_filename, load_text_file_utf8
from Lib.general_fonctions import copy_template_if_not_exists, add_copyright_header, copy_file_with_copyright, update_template_files
import Lib.global_data as globalData
from Lib.pytro2th.tro2th import convert_tro #Version local modifiée
from Lib.trox2th import analyse_xml_balises
from Lib.th2th import create_th_folders
#################################################################################################
debug_log = False # Mode debug des messages
#################################################################################################
# Renommage des tableau pdFrame de station #
#################################################################################################
@pd.api.extensions.register_series_accessor("stationName")
class StationNameAccessor:
def __init__(self, pandas_obj):
self._obj = pandas_obj
def __call__(self):
return (
self._obj
.str.replace('[', '_d_', regex=False)
.str.replace(']', '_f_', regex=False)
.str.replace('@', '_a_', regex=False)
.str.replace(' ', '_e_', regex=False)
.str.replace('p', '_p_', regex=False)
)
#################################################################################################
def parse_therion_centerline(file_data):
"""Découpe des centerline Therion et extrait :
- DATA : lignes de tirs
- date : date du levé
- type : liste des stations
- lines : bloc complet
"""
centerline_list = []
try:
lines = file_data.splitlines()
current_block = []
current_data = []
current_date = None
current_stations = set()
in_centerline = False
for line in lines:
stripped = line.strip()
low = stripped.lower()
# Début centerline
if low.startswith("centerline"):
in_centerline = True
current_block = [line]
current_data = []
current_date = None
current_stations = set()
continue
if not in_centerline:
continue
current_block.append(line)
# Commentaire ou vide
if not stripped or stripped.startswith("#"):
continue
# Date
m = re.match(r"^[ \t]*date\s+(.+)$", line, re.IGNORECASE)
if m:
current_date = m.group(1).strip()
continue
parts = stripped.split()
# Ligne DATA (tir)
if len(parts) >= 2 and parts[0].lower() not in globalData.THERION_KEYWORDS:
current_data.append(line)
for p in parts[:2]:
if (
p.lower() not in globalData.THERION_KEYWORDS
and not re.match(r"^[0-9.+-]+$", p)
):
current_stations.add(p)
# Fin centerline
if low.startswith("endcenterline"):
centerline_list.append({
"lines": current_block,
"DATA": current_data,
"date": current_date,
"type": sorted(current_stations)
})
in_centerline = False
current_block = []
current_data = []
current_date = None
current_stations = set()
except Exception as e:
log.error(f"An error occurred (parse_therion_centerline): {Colors.ENDC}{e}")
globalData.error_count += 1
return centerline_list
#################################################################################################
def regroupe_date(centerline_list):
"""Regroupe les centerlines par date et concatène les champs.
Args:
centerline_list (list): liste de dicts contenant :
- lines (list)
- DATA (list)
- date (str|None)
- type (list)
Returns:
list: liste de dicts regroupés par date
"""
grouped = {}
try:
for idx, cl in enumerate(centerline_list):
# Sécurité : cl doit être un dict
if not isinstance(cl, dict):
log.warning(f"regroupe_date: entrée ignorée (index {idx}, type invalide)")
continue
date = cl.get("date")
if date not in grouped:
grouped[date] = {
"date": date,
"lines": [],
"DATA": [],
"type": set()
}
# Concaténations sécurisées
if isinstance(cl.get("lines"), list):
grouped[date]["lines"].extend(cl["lines"])
if isinstance(cl.get("DATA"), list):
grouped[date]["DATA"].extend(cl["DATA"])
if isinstance(cl.get("type"), (list, set)):
grouped[date]["type"].update(cl["type"])
# Finalisation (conversion set → list)
result = []
for g in grouped.values():
g["type"] = sorted(g["type"])
result.append(g)
return result
except Exception as e:
log.error(f"An error occurred (regroupe_date): {Colors.ENDC}{e}")
globalData.error_count += 1
return []
#################################################################################################
# lecture d'un fichier .mak #
#################################################################################################
def mak_to_th_file(ENTRY_FILE) :
"""Convertit un fichier .mak en fichier .th.
Args:
ENTRY_FILE (str): Le chemin vers le fichier .mak d'entrée.
Returns:
bool: True si la conversion a réussi, False sinon.
"""
# Liste des threads lancés
threads = []
_ConfigPath = "./../../"
shortCurentFile = safe_relpath(ENTRY_FILE)
totReadMeList = ""
totReadMeError = ""
totReadMeFixPoint = ""
datFiles = []
patternDat = re.compile(r'^#.*?\.dat[,;]$', re.IGNORECASE) # Motif insensible à la casse
fixPoints = []
patternFixPoints = re.compile(r'^([\w-]+)\[(m|f)\s*[, ]\s*(-?\d+\.?\d*)\s*[, ]\s*(-?\d+\.?\d*)\s*[, ]\s*(-?\d+\.?\d*)\]\s*[,;]?\s*(?:/.*)?$',re.IGNORECASE)
UTM = []
Datums = set() # Pour stocker les valeurs uniques trouvées
try:
with open(ENTRY_FILE, 'r') as file:
for line in file:
line = line.strip() # Supprime les espaces et sauts de ligne
if patternDat.match(line):
# Supprime le '#' au début et '.dat,' ou '.dat;' à la fin (insensible à la casse)
cleaned_entry = re.sub(r'^#|\.dat[,;]$', '', line, flags=re.IGNORECASE)
datFiles.append(cleaned_entry + ".DAT")
match = patternFixPoints.match(line)
if match:
name_point, mf, x, y, z = match.groups()
fixPoints.append([name_point, mf.lower(), float(x), float(y), float(z)])
if line.startswith('@') and line.endswith(';'):
parts = line[1:-1].split(',') # Supprime "@" et ";", puis découpe
if len(parts) >= 4:
UTM.append(int(parts[3]) if parts[3].isdigit() else parts[3])
if line.startswith('&') and line.endswith(';'):
# Extrait la valeur entre & et ;
Datum = line[1:-1].strip() # Supprime '&' et ';'
Datums.add(Datum)
except FileNotFoundError:
log.error(f"The mak file {Colors.ENDC}{ENTRY_FILE}{Colors.ERROR} dit not exist")
globalData.error_count += 1
except Exception as e:
log.error(f"An error occurred (readMakFile): {Colors.ENDC}{e}")
globalData.error_count += 1
# Vérification des valeurs
if len(Datums) > 1:
log.critical(f"Several different Datums found in {Colors.ENDC}{shortCurentFile}{Colors.CRITICAL}, case not handled! : {Colors.ENDC}{Datums}")
exit(0)
elif not Datums :
log.critical(f"no datum found in mak file : {Colors.ENDC}{shortCurentFile}")
exit(0)
elif not datFiles :
log.critical(f"No dat file found in mak file : {Colors.ENDC}{shortCurentFile}")
exit(0)
elif not fixPoints :
log.critical(f"No fix points found in mak file : {Colors.ENDC}{shortCurentFile}")
exit(0)
datum_lower = next(iter(Datums)).strip().lower().replace(" ","")
if datum_lower not in globalData.datumToEPSG:
log.critical(f"Unknown Datum : {datum_lower}")
exit(0)
# Extraction du numéro de zone UTM et de l'hémisphère (N/S)
if int(UTM[0]) >= 0 :
zone_num = int(UTM[0])
hemisphere = "N"
else :
zone_num = -int(UTM[0])
hemisphere = "S"
# print(zone_num)
# Vérification de la validité de la zone UTM (1-60)
if not 1 <= zone_num <= 60:
log.critical("The UTM zone must be between 1 and 60")
exit(0)
# Construction du code EPSG
epsg_prefix = globalData.datumToEPSG[datum_lower]
epsg_code = f"{epsg_prefix}{zone_num}" if hemisphere == "N" else f"{epsg_prefix}{zone_num + 100}"
# Génération du CRS QGIS (format WKT)
crs_wkt = f'EPSG:{epsg_code}'
log.info(f"Reading mak file: {Colors.ENDC}{shortCurentFile}{Colors.GREEN}, fixed station: {Colors.ENDC}{len(fixPoints)}{Colors.GREEN}, files : {Colors.ENDC}{len(datFiles)}{Colors.GREEN}, UTM Zone : {Colors.ENDC}{UTM[0]}{Colors.GREEN}, Datum : {Colors.ENDC}{next(iter(Datums))}{Colors.GREEN}, SCR : {Colors.ENDC}{crs_wkt}")
totReadMeFixPoint = f"\t* Source mak file : {os.path.basename(ENTRY_FILE)}, fixed station: {len(fixPoints)}, files : {len(datFiles)}, UTM Zone : {UTM[0]}, Datum : {next(iter(Datums))}, SCR : {crs_wkt}\n"
QtySections = 0
for file in datFiles :
ABS_file = os.path.dirname(abspath(args.file)) + "\\"+ file
content, val, encodage = load_text_file_utf8(ABS_file, os.path.basename(ABS_file))
section = content.split('\x0c')
QtySections += len(section)
SurveyTitleMak = sanitize_filename(os.path.basename(abspath(args.file))[:-4])
folderDest = os.path.dirname(abspath(args.file)) + "/" + SurveyTitleMak
copy_template_if_not_exists(globalData.templatePath,folderDest)
##############################################################################################
# Boucle pour lire les dat #
##############################################################################################
stationList = pd.DataFrame(columns=['StationName', 'Survey_Name_01', 'Survey_Name_02'])
totdata = f"\t## Input list:\n"
totMapsPlan = ""
totMapsExtended = ""
proj = args.proj.lower()
values = {
"none": ("# ", "# ", "# "),
"plan": ("", "", "# "),
"extended": ("", "# ", ""),
}
maps, plan, extended = values.get(proj, ("", "", ""))
with alive_bar(QtySections,
title=f"{Colors.GREEN}Surveys progress: {Colors.BLUE}",
length = 20,
enrich_print=False,
stats=True, # Désactive les stats par défaut pour plus de lisibilité
elapsed=True, # Optionnel : masque le temps écoulé
monitor=True, # Optionnel : masque les métriques (ex: "eta")
bar="smooth" # Style de la barre (autres options: "smooth", "classic", "blocks")
) as bar:
with redirect_stdout(sys.__stdout__):
for file in datFiles:
if globalData.error_count > 0:
bar.text(f"{Colors.INFO}file: {Colors.ENDC}{file[:-4]}{Colors.ERROR}, error: {Colors.ENDC}{globalData.error_count}")
else :
bar.text(f"{Colors.INFO}file: {Colors.ENDC}{file[:-4]}")
_file = os.path.dirname(abspath(args.file)) + "\\" + file
shutil.copy(_file, folderDest + "\\Data\\")
ABS_file = folderDest + "\\Data\\" + file
totReadMeError += f"\t* file: {file}\n"
totReadMeList += f"\tfile: {file}\n"
Station, SurveyTitle, totReadMeError, thread2 = dat_to_th_files(ABS_file, fixPoints, crs_wkt, _ConfigPath, totReadMeError, bar)
threads += thread2
totdata += f"\tinput Data/{SurveyTitle}/{SurveyTitle}-tot.th\n"
totMapsPlan += f"\t{plan}MP-{SurveyTitle}-Plan-tot@{SurveyTitle}\n\t{plan}break\n"
totMapsExtended += f"\t{extended}MC-{SurveyTitle}-Extended-tot@{SurveyTitle}\n\t{extended}break\n"
if not Station.empty:
__stationList = pd.concat([stationList, Station], ignore_index=True)
__stationList.sort_values(by='Survey_Name_02', inplace=True, ignore_index=True)
stationList = __stationList.copy()
destination = os.path.join(folderDest, "Sources", os.path.basename(ABS_file))
if os.path.exists(destination):
os.remove(destination)
shutil.move(ABS_file, destination)
bar()
#################################################################################################
# Gestion des equates
#################################################################################################
totdata +=f"\n"
_stationList = stationList.copy()
_stationList["Survey_Name_01"] = _stationList["Survey_Name_01"] + "."+ _stationList["Survey_Name_01"]+ "." + _stationList["Survey_Name_02"]
# On numérote les doublons de Survey_Name pour chaque StationName
_stationList['Survey_Number'] = _stationList.groupby('StationName').cumcount() + 1
# print(_stationList)
# On pivote le tableau pour que chaque Survey_Name devienne une colonne
tableau_pivot = _stationList.pivot(index='StationName', columns='Survey_Number', values='Survey_Name_01')
tableau_pivot.columns = [f'Survey_Name_{i}' for i in tableau_pivot.columns]
# print(f"tableau_pivot : {Colors.ENDC}{tableau_pivot}{Colors.INFO} in {Colors.ENDC}{args.file}")
totdata +=f"\n\t## Equates list:\n"
if 'Survey_Name_2' in tableau_pivot.columns:
# On réinitialise l'index pour avoir StationName comme colonne normale
tableau_pivot = tableau_pivot.reset_index()
tableau_equate = tableau_pivot[tableau_pivot['Survey_Name_2'].notna()]
log.info(f"Total des '{Colors.ENDC}equates{Colors.INFO}' in mak file: {Colors.ENDC}{len(tableau_equate)}{Colors.INFO} in {Colors.ENDC}{safe_relpath(args.file)}")
# print(tableau_equate)
# print(f"fixPoints: {Colors.ENDC}{fixPoints}{Colors.INFO} in {Colors.ENDC}{args.file}")
# Pour chaque ligne du tableau
for _, row in tableau_equate.iterrows():
station = row['StationName']
# On récupère tous les Survey_Name non vides (NaN exclus)
surveys = [row[col] for col in tableau_equate.columns if col.startswith('Survey_Name') and pd.notna(row[col])]
# Pour chaque paire unique (i < j), on écrit la ligne 'equate'
for i in range(len(surveys)):
for j in range(i + 1, len(surveys)):
if surveys[i].split('.')[2] != surveys[j].split('.')[2]:
totdata +=f"\tequate {station}@{surveys[i]} {station}@{surveys[j]}\n"
# print(f"\tequate {station}@{surveys[i]} {station}@{surveys[j]}")
else:
log.info(f"No 'equats' found in {Colors.ENDC}{args.file}")
totdata +=f"\n\t## Maps list:\n\t{maps}input {SurveyTitleMak}-maps.th\n"
config_vars = {
'fileName': SurveyTitleMak,
'caveName': SurveyTitleMak.replace("_", " "),
'Author': globalData.Author,
'Copyright': globalData.Copyright,
'Scale' : args.scale,
'Target' : "TARGET",
'mapComment' : globalData.mapComment,
'club' : globalData.club,
'thanksto' : globalData.thanksto,
'datat' : globalData.datat,
'wpage' : globalData.wpage,
'cs' : crs_wkt,
'configPath' : " ",
'totData' : totdata,
'maps' : maps,
'plan': plan,
'extended': extended,
'XVIscale':globalData.XVIScale,
'other_scraps_plan' : totMapsPlan,
'other_scraps_extended' : totMapsExtended,
'readMeList' : totReadMeList,
'errorList' : totReadMeError,
'fixPointList' : totReadMeFixPoint,
'file_info' : f"# File generated by pyCreateTh.py version: {globalData.Version} date: {datetime.now().strftime("%Y.%m.%d-%H:%M:%S")}",
}
DEST_PATH = os.path.dirname(args.file) + '/' + SurveyTitleMak
update_template_files(DEST_PATH + '/template.thconfig', config_vars, DEST_PATH + '/' + SurveyTitleMak + '.thconfig')
update_template_files(DEST_PATH + '/template-tot.th', config_vars, DEST_PATH + '/' + SurveyTitleMak + '-tot.th')
update_template_files(DEST_PATH + '/template-maps.th', config_vars, DEST_PATH + '/' + SurveyTitleMak + '-maps.th')
#################################################################################################
# Final therion compilation #
#################################################################################################
if globalData.finalTherionExe == True:
FILE = DEST_PATH + '/' + SurveyTitleMak + '.thconfig'
t = compile_file(FILE, therion_path=globalData.therionPath)
threads.append(t)
for thread in threads: # Attendre que tous les threads se terminent
thread.join()
logfile = (DEST_PATH + '/therion.log').replace("\\", "/")
with open(logfile, 'r') as f:
content = f.read()
# print(content)
stat = get_stats_from_log(content)
if stat["length"] != 0.0 and stat["depth"] != 0.0 :
totReadMeList += f"\tFinal compilation successful length: {stat["length"]} m, depth: {stat["depth"]} m\n"
log.info(f"Final compilation successful length: {Colors.ENDC}{stat["length"]}{Colors.INFO} m, depth: {Colors.ENDC}{stat["depth"]}{Colors.INFO} m")
else :
totReadMeList += f"\tFinal compilation error, check log file\n"
log.error(f"Final compilation error, check log file")
config_vars['readMeList'] = totReadMeList
update_template_files(DEST_PATH + '/template-readme.md', config_vars, DEST_PATH +'/' + SurveyTitle + '-readme.md')
return SurveyTitleMak, threads
#################################################################################################
def station_list_dat(data, list, list_fixed,fixPoints, currentSurveyName) :
"""Crée une liste de stations à partir des données fournies issues d'un fichier dat.
Args:
data (DataFrame): Les données d'entrée contenant les informations sur les stations.
list (DataFrame): La liste des stations existantes.
fixPoints (list): Les points de fixation à considérer.
currentSurveyName (str): Le nom de l'enquête en cours.
Returns:
DataFrame: La liste mise à jour des stations.
"""
# Création d'un DataFrame à partir des données
rows1 = [line.split() for line in data['DATA']]
dfDATA = pd.DataFrame(rows1)
# stations = pd.concat([dfDATA.iloc[1:, 0], dfDATA.iloc[1:, 1]]).drop_duplicates().str.replace('[', '%').str.replace(']', '%%').str.replace('@', '_._')
stations = pd.concat([dfDATA.iloc[1:, 0], dfDATA.iloc[1:, 1]]).drop_duplicates().stationName()
stationsFixed = pd.concat([dfDATA.iloc[1:, 0], dfDATA.iloc[1:, 1]]).drop_duplicates().stationName()
fixed_names = {point[0] for point in fixPoints}
stations = stations[~stations.isin(fixed_names)]
stations_fixed = stationsFixed[stationsFixed.isin(fixed_names)]
new_entries = pd.DataFrame({
'StationName': stations,
'Survey_Name_01': currentSurveyName
})
new_fixed = pd.DataFrame({
'Station_Fix': stations_fixed,
'Survey_Name': currentSurveyName
})
list = pd.concat([list, new_entries], ignore_index=True)
list_fixed = pd.concat([list_fixed, new_fixed], ignore_index=True)
return list_fixed, list, dfDATA
#################################################################################################
def station_list_th(data, list, list_fixed, fixPoints, currentSurveyName) :
"""Crée une liste de stations à partir des données fournies issues d'un fichier tro.
Args:
data (DataFrame): Les données d'entrée contenant les informations sur les stations.
list (DataFrame): La liste des stations existantes.
fixPoints (list): Les points de fixation à considérer.
currentSurveyName (str): Le nom de l'enquête en cours.
Returns:
DataFrame: La liste mise à jour des stations.
"""
# Création d'un DataFrame à partir des données
rows1 = [line.split() for line in data['DATA']]
dfDATA = pd.DataFrame(rows1)
# stations = pd.concat([dfDATA.iloc[1:, 0], dfDATA.iloc[1:, 1]]).drop_duplicates().str.replace('[', '%').str.replace(']', '%%').str.replace('@', '_._')
# stations = pd.concat([dfDATA.iloc[1:, 0], dfDATA.iloc[1:, 1]]).drop_duplicates().stationName()
# stations = pd.concat([dfDATA.iloc[:, 0], dfDATA.iloc[:, 1]]).drop_duplicates().reset_index(drop=True)
stations = pd.concat([dfDATA.iloc[:, 0], dfDATA.iloc[:, 1]]).dropna().astype(str).loc[lambda s: ~s.isin(["-", "*"])].drop_duplicates().reset_index(drop=True)
stationsFixed = pd.concat([dfDATA.iloc[:, 0], dfDATA.iloc[:, 1]]).dropna().astype(str).loc[lambda s: ~s.isin(["-", "*"])].drop_duplicates().reset_index(drop=True)
# print(stations)
fixed_names = {point[0] for point in fixPoints}
stations = stations[~stations.isin(fixed_names)]
stations_fixed = stationsFixed[stationsFixed.isin(fixed_names)]
new_entries = pd.DataFrame({
'StationName': stations,
'Survey_Name_01': currentSurveyName
})
new_fixed = pd.DataFrame({
'Station_Fix': stations_fixed,
'Survey_Name': currentSurveyName
})
list = pd.concat([list, new_entries], ignore_index=True)
list_fixed = pd.concat([list_fixed, new_fixed], ignore_index=True)
# print(new_entries)
return list_fixed, list, dfDATA
#################################################################################################
def formated_station_list(df, dataFormat, unit = "meter", shortCurentFile ="None") :
"""Formate une liste de stations à partir d'un DataFrame.
Args:
df (DataFrame): Le DataFrame contenant les données des stations.
dataFormat (str): Le format des données à utiliser pour le traitement.
unit (str): L'unité de mesure à utiliser (par défaut "meter").
shortCurentFile (str): Le nom du fichier en cours de traitement (pour les logs).
Returns:
DataFrame: Le DataFrame formaté avec les colonnes appropriées.
"""
# Remplacer les None/NaN par des espaces
df = df.fillna(" ")
# Conserver la première ligne (en-têtes) séparément
header_row = df.iloc[0]
# Traiter uniquement les lignes à partir de la deuxième (index 1)
df_data = df.iloc[1:].copy()
columns = dataFormat.split()
Koef = 0.3048 if unit == "length meter" else 1.0
if "length" in columns:
col_name = df_data.columns[columns.index("length") - 2]
df_data.iloc[:, col_name] = (df_data.iloc[:, col_name].astype(float) * Koef).apply(lambda x: f"{x:.2f}")
if "up" in columns:
col_name = df_data.columns[columns.index("up") - 2]
df_data[col_name] = pd.to_numeric(df_data[col_name], errors='coerce') * Koef
df_data[col_name] = df_data[col_name].apply(lambda x: "-" if pd.notna(x) and x < 0 else f"{x:.2f}" if pd.notna(x) else "")
if "down" in columns:
col_name = df_data.columns[columns.index("down") - 2]
df_data[col_name] = pd.to_numeric(df_data[col_name], errors='coerce') * Koef
df_data[col_name] = df_data[col_name].apply(lambda x: "-" if pd.notna(x) and x < 0 else f"{x:.2f}" if pd.notna(x) else "")
if "right" in columns:
col_name = df_data.columns[columns.index("right") - 2]
df_data[col_name] = pd.to_numeric(df_data[col_name], errors='coerce') * Koef
df_data[col_name] = df_data[col_name].apply(lambda x: "-" if pd.notna(x) and x < 0 else f"{x:.2f}" if pd.notna(x) else "")
if "left" in columns:
col_name = df_data.columns[columns.index("left") - 2]
df_data[col_name] = pd.to_numeric(df_data[col_name], errors='coerce') * Koef
df_data[col_name] = df_data[col_name].apply(lambda x: "-" if pd.notna(x) and x < 0 else f"{x:.2f}" if pd.notna(x) else "")
if "compass" in columns:
df_data.iloc[:, columns.index("compass")-2] = (df_data.iloc[:, columns.index("compass")-2].astype(float)).apply(lambda x: f"{x:.1f}")
if "clino" in columns:
df_data.iloc[:, columns.index("clino")-2] = (df_data.iloc[:, columns.index("clino")-2].astype(float)).apply(lambda x: f"{x:.1f}")
if "from" in columns:
df_data.iloc[:, columns.index("from")-2] = (df_data.iloc[:, columns.index("from")-2].astype(str).stationName())
if "to" in columns:
df_data.iloc[:, columns.index("to")-2] = (df_data.iloc[:, columns.index("to")-2].astype(str).stationName())
# Remplacer les NaN par des espaces après transformation
df_data = df_data.fillna(" ")
# Ajouter un '# ' au début de la colonne 9 (si non vide)
df_data.iloc[:, 9] = df_data.iloc[:, 9].apply(lambda x: f"# {x}" if str(x).strip() and str(x) != " " else x)
# Ajouter "_hab" à la colonne 2 si FROM == TO
df_data.iloc[:, 1] = df_data.apply(
lambda row: f"{row.iloc[1]}_hab" if str(row.iloc[0]).strip() == str(row.iloc[1]).strip() else row.iloc[1],
axis=1
)
# Gestion des flags surface et not surface
new_rows = []
for idx, row in df_data.iterrows():
col10 = str(row.iloc[9])
# Si la colonne 10 contient #|L# Exclude from Length
if "#|L#" in col10:
surface_row = [" "] * len(row)
surface_row[0] = "flags duplicate"
new_rows.append(surface_row)
new_rows.append(row.tolist())
not_surface_row = [" "] * len(row)
not_surface_row[0] = "flags not duplicate"
new_rows.append(not_surface_row)
log.warning(f"Flags '{Colors.ENDC}{col10}{Colors.WARNING}' not implemented in therion, line {Colors.ENDC}{idx+1}{Colors.WARNING} in {Colors.ENDC}{shortCurentFile}")
# Si la colonne 10 contient #|S# type Spay (habillages)
elif "#|S#" in col10:
surface_row = [" "] * len(row)
surface_row[0] = "flags splay"
new_rows.append(surface_row)
new_rows.append(row.tolist())
row[1] = "-"
not_surface_row = [" "] * len(row)
not_surface_row[0] = "flags not splay"
new_rows.append(not_surface_row)
# Si la colonne 10 contient #|X# total exclusion
elif "#|X#" in col10 or "#|XL#" in col10:
surface_row = [" "] * len(row)
surface_row[0] = "flags duplicate"
new_rows.append(surface_row)
new_rows.append(row.tolist())
not_surface_row = [" "] * len(row)
not_surface_row[0] = "flags not duplicate"
new_rows.append(not_surface_row)
log.warning(f"Flags '{Colors.ENDC}{col10}{Colors.WARNING}' not implemented in therion, line {Colors.ENDC}{idx+1}{Colors.WARNING} in {Colors.ENDC}{shortCurentFile}")
# Si la colonne 10 contient #|P# exclude from plotting
elif "#|P#" in col10:
surface_row = [" "] * len(row)
surface_row[0] = "# flags exclude from plot no implemented"
new_rows.append(surface_row)
new_rows.append(row.tolist())
not_surface_row = [" "] * len(row)
not_surface_row[0] = "# flags not exclude from plot no implemented"
new_rows.append(not_surface_row)
log.warning(f"Flags exclude from plot #|P# not implemented in therion, line {Colors.ENDC}{idx+1}{Colors.WARNING} in {Colors.ENDC}{shortCurentFile}")
# Si la colonne 10 contient #|C# exclude from closure
elif "#|C#" in col10:
surface_row = [" "] * len(row)
surface_row[0] = "# flags exclude from closure no implemented"
new_rows.append(surface_row)
new_rows.append(row.tolist())
not_surface_row = [" "] * len(row)
not_surface_row[0] = "# flags not exclude from closure no implemented"
new_rows.append(not_surface_row)
log.warning(f"Flags #|C# exclude from closure not implemented in therion, line {Colors.ENDC}{idx+1}{Colors.WARNING} in {Colors.ENDC}{shortCurentFile}")
# Si la colonne 10 contient #|PL# exclude from plotting and Length ( i.e converti en splay)
elif "#|PL#" in col10 or "#|LP#" in col10:
surface_row = [" "] * len(row)
surface_row[0] = "flags splay"
new_rows.append(surface_row)
new_rows.append(row.tolist())
row[1] = "-"
not_surface_row = [" "] * len(row)
not_surface_row[0] = "flags not splay"
new_rows.append(not_surface_row)
# log.warning(f"Flags '{Colors.ENDC}{col10}{Colors.WARNING}' not implemented in therion, line {Colors.ENDC}{idx+1}{Colors.WARNING} in {Colors.ENDC}{shortCurentFile}")
# Si la colonne 10 contient #|LC# exclude from Length and Closure
elif "#|LC#" in col10 or "#|CL#" in col10:
surface_row = [" "] * len(row)
surface_row[0] = "flags duplicate"
new_rows.append(surface_row)
new_rows.append(row.tolist())
not_surface_row = [" "] * len(row)
not_surface_row[0] = "flags not duplicate"
new_rows.append(not_surface_row)
log.warning(f"Flags '{Colors.ENDC}{col10}{Colors.WARNING}' not implemented in therion, line {Colors.ENDC}{idx+1}{Colors.WARNING} in {Colors.ENDC}{shortCurentFile}")
# Si la colonne 10 contient #|PLC# exclude from plotting, closure and length
elif "#|PLC#" in col10:
surface_row = [" "] * len(row)
surface_row[0] = "flags duplicate"
new_rows.append(surface_row)
new_rows.append(row.tolist())
not_surface_row = [" "] * len(row)
not_surface_row[0] = "flags not duplicate"
new_rows.append(not_surface_row)
elif "#|" in col10:
surface_row = [" "] * len(row)
surface_row[0] = "# flags unknown no implemented"
new_rows.append(surface_row)
new_rows.append(row.tolist())
not_surface_row = [" "] * len(row)
not_surface_row[0] = "# flags not unknown no implemented"
new_rows.append(not_surface_row)
log.error(f"Flags unknown '{Colors.ENDC}{col10}{Colors.WARNING}' not implemented, line {Colors.ENDC}{idx+1}{Colors.WARNING} in {Colors.ENDC}{shortCurentFile}")
globalData.error_count += 1
else:
new_rows.append(row.tolist())
prev_row = row # Garder trace de la ligne précédente
cleaned_rows = []
i = 0
while i < len(new_rows):
current = new_rows[i]
if (i + 1 < len(new_rows) and
str(current[0]).strip() == "flags not surface" and
str(new_rows[i + 1][0]).strip() == "flags surface"):
i += 2
elif (i + 1 < len(new_rows) and
str(current[0]).strip() == "flags not splay" and
str(new_rows[i + 1][0]).strip() == "flags splay"):
i += 2
elif (i + 1 < len(new_rows) and
str(current[0]).strip() == "flags not duplicate" and
str(new_rows[i + 1][0]).strip() == "flags duplicate"):
i += 2
elif (i + 1 < len(new_rows) and
str(current[0]).strip() == "# flags not exclude from closure no implemented" and
str(new_rows[i + 1][0]).strip() == "# flags exclude from closure no implemented"):
i += 2
elif (i + 1 < len(new_rows) and
str(current[0]).strip() == "# flags not exclude from plot no implemented" and
str(new_rows[i + 1][0]).strip() == "# flags exclude from plot no implemented"):
i += 2
elif (i + 1 < len(new_rows) and
str(current[0]).strip() == "# flags not unknown no implemented" and
str(new_rows[i + 1][0]).strip() == "# flags unknown no implemented"):
i += 2
else:
cleaned_rows.append(current)
i += 1
# Convertir les lignes en chaines formatées
output = []
# Ajouter la première ligne (en-têtes) telle quelle
header_str = "\t\t" + "\t".join(map(str, header_row))
output.append(header_str)
# Ajouter les autres lignes traitées
for row in cleaned_rows:
row_str = "\t\t"
flag = False
for i in row :
if str(i) == " " :
row_str += ""
elif str(i).startswith("#") or flag == True :
row_str += f" {str(i)}"
flag = True
else:
row_str += f"\t{str(i)}"
output.append(row_str)
return "\n".join(output)
#################################################################################################
def find_duplicates_by_date_and_team(data):
"""Finds duplicates in the data based on SURVEY_DATE and SURVEY_TEAM.
Args:
data (list): A list of dictionaries containing survey data.
Returns:
list: A list of dictionaries containing information about duplicates found.
"""
grouped = defaultdict(list)
# Étape 1 : regroupement par (SURVEY_DATE, SURVEY_TEAM)
for entry in data:
key = (entry['SURVEY_DATE'], entry['SURVEY_TEAM'])
grouped[key].append(entry)
duplicates = []
for key, entries in grouped.items():
if len(entries) < 2:
continue
# Construire un mapping ID -> stations
id_to_entry = {entry['ID']: entry for entry in entries}
id_to_stations = {entry['ID']: set(entry['STATION'].iloc[:, 0]) for entry in entries}
# Construire les connexions directes (graphe implicite)
adjacency = defaultdict(set)
ids = list(id_to_entry.keys())
for i in range(len(ids)):
for j in range(i + 1, len(ids)):
id_i, id_j = ids[i], ids[j]
if id_to_stations[id_i] & id_to_stations[id_j]: # intersection non vide
adjacency[id_i].add(id_j)
adjacency[id_j].add(id_i)
# Trouver les composantes connexes (DFS)
visited = set()
def dfs(node, component):
visited.add(node)
component.append(node)
for neighbor in adjacency[node]:
if neighbor not in visited:
dfs(neighbor, component)
for id_ in ids:
if id_ not in visited:
component = []
dfs(id_, component)
if len(component) > 1:
# Calcul des stations communes (fusion de toutes)
stations_union = set()
for i in range(len(component)):
for j in range(i + 1, len(component)):
common = id_to_stations[component[i]] & id_to_stations[component[j]]
stations_union.update(common)
duplicates.append({
'SURVEY_DATE': key[0],
'SURVEY_TEAM': key[1],
'IDS': sorted(component),
'COMMON_STATIONS': sorted(stations_union)
})
return duplicates
#################################################################################################
def find_duplicates_by_date(data):
"""Finds duplicates in the data based on SURVEY_DATE.
Args:
data (list): A list of dictionaries containing survey data.
Returns:
list: A list of dictionaries containing information about duplicates found.
"""
grouped = defaultdict(list)
# Étape 1 : regroupement uniquement par SURVEY_DATE
for entry in data:
key = entry['SURVEY_DATE']
grouped[key].append(entry)
duplicates = []
for survey_date, entries in grouped.items():
if len(entries) < 2:
continue
# Construire un mapping ID -> stations
id_to_entry = {entry['ID']: entry for entry in entries}
id_to_stations = {entry['ID']: set(entry['STATION'].iloc[:, 0]) for entry in entries}
# Construire les connexions directes (graphe implicite)
adjacency = defaultdict(set)
ids = list(id_to_entry.keys())
for i in range(len(ids)):
for j in range(i + 1, len(ids)):
id_i, id_j = ids[i], ids[j]
if id_to_stations[id_i] & id_to_stations[id_j]: # intersection non vide
adjacency[id_i].add(id_j)
adjacency[id_j].add(id_i)
# Trouver les composantes connexes (DFS)
visited = set()
def dfs(node, component):
visited.add(node)
component.append(node)
for neighbor in adjacency[node]:
if neighbor not in visited:
dfs(neighbor, component)
for id_ in ids:
if id_ not in visited:
component = []
dfs(id_, component)
if len(component) > 1:
# Calcul des stations communes (fusion de toutes)
stations_union = set()
for i in range(len(component)):
for j in range(i + 1, len(component)):
common = id_to_stations[component[i]] & id_to_stations[component[j]]
stations_union.update(common)
# Utiliser le SURVEY_TEAM de la première occurrence
first_entry = id_to_entry[component[0]]
duplicates.append({
'SURVEY_DATE': survey_date,
'SURVEY_TEAM': first_entry['SURVEY_TEAM'],
'IDS': sorted(component),
'COMMON_STATIONS': sorted(stations_union)
})
return duplicates
#################################################################################################
def points_uniques(data, crs_wkt):
"""Extrait les points uniques de la colonne 0 du DataFrame 'data' et les compare avec la colonne 1.
Exclut les points présents dans 'crs_wkt' si fourni.
Args:
data (DataFrame): Le DataFrame contenant les données.
crs_wkt (list, optional): Une liste de points à exclure.
Returns:
list: Une liste de points uniques.
"""
# Création d'un DataFrame à partir des lignes de données
rows = [line.split() for line in data['DATA']]
dfDATA = pd.DataFrame(rows)
# Extraction des colonnes 0 et 1, en ignorant la première ligne (souvent en-tête)
col0 = dfDATA.iloc[1:, 0]
col1 = dfDATA.iloc[1:, 1]
# Nettoyage des noms (remplacement des crochets)
col0_clean = col0.stationName()
col1_clean = col1.stationName()
# Exclure les points présents dans la colonne 1
uniques_col0 = col0_clean[~col0_clean.isin(col1_clean)]
# Supprimer les doublons
uniques_col0 = uniques_col0.drop_duplicates()
# Exclure les points présents dans la liste crs_wkt
if isinstance(crs_wkt, (set, list)):
uniques_col0 = uniques_col0[~uniques_col0.isin(crs_wkt)]
return uniques_col0.reset_index(drop=True).tolist()
#################################################################################################
def merge_duplicate_surveys(data, duplicates, id_offset=10000):
"""Merges duplicate survey entries into a single entry.
Args:
data (list): A list of dictionaries containing survey data.
duplicates (list): A list of dictionaries containing information about duplicates found.
id_offset (int, optional): An offset to apply to the IDs of merged entries. Defaults to 10000.
Returns:
list: A list of merged survey entries.
"""
id_to_entry = {entry['ID']: entry for entry in data}
merged_data = []
used_ids = set()
for i, group in enumerate(duplicates):
ids = group['IDS']
merged_entry = {
'ID': id_offset + i,
'SURVEY_TITLE': data[ids[0]]['SURVEY_TITLE'],
'SURVEY_NAME': None,
'SURVEY_DATE': group['SURVEY_DATE'],
'COMMENT': data[ids[0]]['COMMENT'],
'SURVEY_TEAM': group['SURVEY_TEAM'],
'DECLINATION': data[ids[0]]['DECLINATION'],
'FORMAT': data[ids[0]]['FORMAT'],
'CORRECTIONS': data[ids[0]]['CORRECTIONS'],
"CORRECTIONS2": data[ids[0]]['CORRECTIONS2'],
"DISCOVERY": data[ids[0]]['DISCOVERY'],
"PREFIX": data[ids[0]]['PREFIX'],
'DATA': [],
'STATION': [],
'SOURCE': []
}
# Liste des champs texte simples à hériter (on peut affiner selon stratégie souhaitée)
text_fields = ['SURVEY_TITLE', 'COMMENT', 'DECLINATION', 'FORMAT', 'CORRECTIONS']
# Regrouper les valeurs pour tous les champs à fusionner
text_values = {field: set() for field in text_fields}
survey_name_list = set()
source_set = set()
station_frames = []
first_data_line = True
for id_ in ids:
entry = id_to_entry[id_]
used_ids.add(id_)
for field in text_fields:
value = entry.get(field)
if value not in [None, '']:
text_values[field].add(value)
name = entry.get('SURVEY_NAME')
if name not in [None, '']:
survey_name_list.add(name)
data_lines = entry.get('DATA', [])
if data_lines:
if first_data_line:
merged_entry['DATA'].extend(data_lines)
first_data_line = False
else:
merged_entry['DATA'].extend(data_lines[1:]) # ignorer l'entête
sources = entry.get('SOURCE', [])
if isinstance(sources, str):
source_set.add(sources)
elif isinstance(sources, list):
source_set.update(sources)
if isinstance(entry['STATION'], pd.DataFrame):
station_frames.append(entry['STATION'])
# Affecter les valeurs texte (si une seule unique valeur, sinon None)
for field in text_fields:
if len(text_values[field]) == 1:
merged_entry[field] = next(iter(text_values[field]))
# Nouveau nom concaténé avec "_"
if survey_name_list:
sorted_names = sorted(survey_name_list)
full_name = "_".join(sorted_names)
if len(full_name) <= 40:
merged_entry['SURVEY_NAME'] = full_name
else:
# Tronquer au milieu
prefix = sorted_names[0]
suffix = sorted_names[-1]
connector = "_-_"
max_prefix_suffix_len = 50 - len(connector)
# On répartit équitablement entre début et fin (si possible)
half_len = max_prefix_suffix_len // 2
prefix = prefix[:half_len]
suffix = suffix[-(max_prefix_suffix_len - len(prefix)):]
merged_entry['SURVEY_NAME'] = prefix + connector + suffix
# Fusionner les DataFrames STATION
if station_frames:
merged_entry['STATION'] = pd.concat(station_frames, ignore_index=True)
merged_entry['SOURCE'] = "\n".join(sorted(source_set))
merged_data.append(merged_entry)
# Ajouter les entrées qui ne faisaient pas partie des doublons
for entry in data:
if entry['ID'] not in used_ids:
merged_data.append(deepcopy(entry))
return merged_data
#################################################################################################
def dat_survey_format_extract(section_data, headerData, currentSurveyName, fichier, totReadMeError):
"""Extracts and validates the format code from the section data.
Args:
section_data (dict): The section data containing survey information.
headerData (dict): The header data for the survey.
currentSurveyName (str): The name of the current survey.
fichier (str): The file being processed.
totReadMeError (str): A string to accumulate error messages.
Returns:
dataFormat (str), length (int), compass (str), clino (str), totReadMeError (str)
"""
if section_data['FORMAT'] is None or len(section_data['FORMAT']) < 11 or len(section_data['FORMAT']) > 15 :
log.error(f"Error in format code {Colors.ENDC}{section_data['FORMAT']}{Colors.ERROR} in {Colors.ENDC}{currentSurveyName}")
log.debug(f"Error in format code SURVEY_NAME {Colors.ENDC}{section_data['SURVEY_NAME']}")
log.debug(f"Error in format code SURVEY_DATE {Colors.ENDC}{section_data['SURVEY_DATE']}")
log.debug(f"SURVEY TITLE: {Colors.ENDC}{section_data['SURVEY_TITLE']}")
log.debug(f"COMMENT: {Colors.ENDC}{section_data['COMMENT']}")
log.debug(f"SURVEY TEAM: {Colors.ENDC}{section_data['SURVEY_TEAM']}")
log.debug(f"DECLINATION: {Colors.ENDC}{section_data['DECLINATION']}")
log.debug(f"FORMAT: {Colors.ENDC}{section_data['FORMAT']}")
log.debug(f"CORRECTIONS: {Colors.ENDC}{section_data['CORRECTIONS']}")
log.debug(f"DATA: {Colors.ENDC}{(section_data['DATA'])}")
log.debug(f"DATA Qté: {Colors.ENDC}{len(section_data['DATA'])}")
log.debug(f"STATION: {Colors.ENDC}{(section_data['STATION'])}")
log.debug(f"SOURCE: {Colors.ENDC}{section_data['SOURCE']}\n")
globalData.error_count += 1
totReadMeError += f"\tError in format code {section_data['FORMAT']} in {currentSurveyName}\n"
def Dimension(string="") :
directions = {'U': " up", 'D': " down", 'R': " right", 'L': " left"}
if string in directions:
return directions[string]
else:
log.error(f"Error in format str {Colors.ENDC}{string}{Colors.ERROR} code {Colors.ENDC}{section_data['FORMAT']}{Colors.ERROR} in {Colors.ENDC}{fichier}{Colors.ERROR} in {Colors.ENDC}{currentSurveyName}")
totReadMeError += f"\tError in format str {string} code {section_data['FORMAT']} in {fichier} in {currentSurveyName}\n"
globalData.error_count += 1
return ""
def LRUD_association(string="") :
# In Therion the standard LRUD association is the shot and not the station
# LRUD Association: F=From Station, T=To Station
if string == 'F' : return ""
elif string == 'T' : return ""
else :
log.error(f"Error in format str {Colors.ENDC}{string}{Colors.ERROR} code {Colors.ENDC}{section_data['FORMAT']}{Colors.ERROR} in {Colors.ENDC}{fichier}{Colors.ERROR} in {Colors.ENDC}{currentSurveyName}")
totReadMeError += f"\tError in format str {string} code {section_data['FORMAT']} in {fichier} in {currentSurveyName}\n"
globalData.error_count += 1
return ""
def Backsight(string="") : # Backsight: B=Redundant, N or empty=No Redundant Backsights.
if string == 'B' :
log.error(f"Backsight unit not yet implemented {Colors.ENDC}{section_data['FORMAT']}{Colors.ERROR} in {Colors.ENDC}{currentSurveyName}")
totReadMeError += f"\tBacksight unit not yet implemented {Colors.ENDC}{section_data['FORMAT']}{Colors.ERROR} in {Colors.ENDC}{currentSurveyName}\n"
globalData.error_count += 1
return ""
elif string == 'N' : return ""
else :
log.error(f"Error in format str {Colors.ENDC}{string}{Colors.ERROR} code {Colors.ENDC}{section_data['FORMAT']}{Colors.ERROR} in {Colors.ENDC}{fichier}{Colors.ERROR} in {Colors.ENDC}{currentSurveyName}")
totReadMeError += f"\tError in format str {string} code {section_data['FORMAT']} in {fichier} in {currentSurveyName}\n"
globalData.error_count += 1
return ""
def ShotOrder(string="") :
if string == 'L' : return " length"
elif string == 'A' : return " compass"
elif string == 'D' :
if clino == 'depth feet' : return " depthchange"
else : return " clino"
elif string == 'a' : return " backcompass"
elif string == 'd' : return " backclino"
else :
log.error(f"Error in format str {Colors.ENDC}{string}{Colors.ERROR} code {Colors.ENDC}{section_data['FORMAT']}{Colors.ERROR} in {Colors.ENDC}{fichier}{Colors.ERROR} in {Colors.ENDC}{currentSurveyName}")
totReadMeError += f"\tError in format str {string} code {section_data['FORMAT']} in {fichier} in {currentSurveyName}\n"
globalData.error_count += 1
return ""
type_Data = "normal"
################################################ Section Units 0-3 ###############################################
if section_data['FORMAT'][0] == 'D' : compass = 'compass degree'
elif section_data['FORMAT'][0] == 'R' : compass = 'compass grads'
else :
compass = 'Compass_error'
log.error(f"Compass bearing unit 'quads' not yet implemented in {Colors.ENDC}{currentSurveyName}")
globalData.error_count += 1
totReadMeError += f"\tCompass bearing unit 'quads' not yet implemented in survey {currentSurveyName}\n"
if section_data['FORMAT'][1] == 'D' : length = 'length feet'
elif section_data['FORMAT'][1] == 'M' : length = 'length meter'
else :
length = 'Length_error'
log.error(f"Length unit 'Feet and Inches' not yet implemented in {Colors.ENDC}{currentSurveyName}")
globalData.error_count += 1
totReadMeError += f"\tLength unit 'Feet and Inches' not yet implemented in {currentSurveyName}\n"
if section_data['FORMAT'][3] == 'D' : clino = 'clino degree'
elif section_data['FORMAT'][3] == 'R' : clino = 'clino grads'
# elif section_data['FORMAT'][3] == 'G' : clino = 'percent' # %Grades à vérifier?
# elif section_data['FORMAT'][3] == 'M' : clino = 'grads' # Degrees and Minutes
elif section_data['FORMAT'][3] == 'W' :
clino = 'clino degree' # Depth Gauge
type_Data = "normal" # Depth Gauge
else :
clino = 'Inclination_error'
log.error(f"Inclination unit not yet implemented in {Colors.ENDC}{currentSurveyName}")
globalData.error_count += 1
totReadMeError += f"\tInclination unit not yet implemented in {currentSurveyName}\n"
################################################ Section dimensions 4-7 ###############################################
dataFormat = " " + headerData[5].lower()
dataFormat += " " + headerData[6].lower()
dataFormat += " " + headerData[7].lower()
dataFormat += " " + headerData[8].lower()
################################################ Section Shot 8-11 ou 13 ###############################################
if len(section_data['FORMAT']) == 11 or len(section_data['FORMAT']) == 12 or len(section_data['FORMAT']) == 13:
if len(section_data['FORMAT']) == 13 : # UUUUDDDDSSSBL
dataFormat = LRUD_association(section_data['FORMAT'][12]) + dataFormat
dataFormat = Backsight(section_data['FORMAT'][11]) + dataFormat # UUUUDDDDSSSB
elif len(section_data['FORMAT']) == 12 : dataFormat = Backsight(section_data['FORMAT'][11]) + dataFormat
dataFormat = ShotOrder(section_data['FORMAT'][10]) + dataFormat
dataFormat = ShotOrder(section_data['FORMAT'][9]) + dataFormat
dataFormat = ShotOrder(section_data['FORMAT'][8]) + dataFormat
elif len(section_data['FORMAT']) == 15 : # UUUUDDDDSSSSSBL
dataFormat = LRUD_association(section_data['FORMAT'][14]) + dataFormat
dataFormat = Backsight(section_data['FORMAT'][13]) + dataFormat
dataFormat = ShotOrder(section_data['FORMAT'][11]) + dataFormat
dataFormat = ShotOrder(section_data['FORMAT'][9]) + dataFormat
dataFormat = ShotOrder(section_data['FORMAT'][8]) + dataFormat
################################################ Section Shot 8-11 ou 13 ###############################################
dataFormat = "data " + type_Data + " from to" + dataFormat + " # comment"
return dataFormat, length, compass, clino, totReadMeError
#################################################################################################
# Convertit un fichier .tro en fichiers .th #
#################################################################################################
def tro_to_th_files(ENTRY_FILE, centerlines = [],
entrance = "",
fileTitle = "",
coordinates = [],
coordsyst = "",
fle_th_fnme = "",
CONFIG_PATH = "",
totReadMeError = "",
bar=None) :
"""
Convertit un fichier .tro en fichiers .th
Args:
ENTRY_FILE (str): Le chemin vers le fichier .dat d'entrée.
fixPoints (list, optional): Liste des points de fixation. Defaults to [].
crs_wkt (str, optional): Le système de référence spatiale en WKT. Defaults to "".
CONFIG_PATH (str, optional): Le chemin vers le fichier de configuration. Defaults to "".
Returns:
tuple: Un tuple contenant un DataFrame des stations et le nom du survey.
"""
#################################################################################################
# 1 : Initialisations #
#################################################################################################
data = []
unique_id = 1
totdata = f"\t## Input list:\n"
totMapsPlan = ""
totMapsExtended = ""
totReadMeErrorDat = ""
maps = ""
plan = ""
extended = ""
totReadMe = ""
surveyCount = 0
totReadMeFixPoint = f"\tcs {coordsyst}\n"
totReadMeFixPoint += f"\tFix point, station : {entrance}, coordinates: [{coordinates[0]} m, {coordinates[1]} m, {coordinates[2]} m]\n"
listStationSection = pd.DataFrame(columns=['StationName', 'Survey_Name'])
listStationSectionFixed = pd.DataFrame(columns=['Station_Fix', 'Survey_Name'])
threads = []
fixPoints = []
fixPoints.append([entrance, " ", coordinates[0], coordinates[1], coordinates[2]])
log.debug(f"{Colors.INFO}------------------------------------------------------------------------------------------------------------------{Colors.ENDC}")
SurveyTitle = sanitize_filename(os.path.basename(ENTRY_FILE)[:-4])
folderDest = os.path.dirname(ENTRY_FILE) + "\\" + SurveyTitle
copy_template_if_not_exists(globalData.templatePath,folderDest)
#################################################################################################
# 2 : Boucle pour convertir les centerlines #
#################################################################################################
for i, cl in enumerate( sorted(centerlines, key=lambda x: (x['date'] is None, x['date'])), start=1 ):
currentSurveyName = f"{globalData.SurveyPrefixName}{i:02d}_{sanitize_filename(cl['date'])}"
fileName = folderDest + "\\Data\\" + currentSurveyName + ".th"
log.debug(f"{Colors.INFO}Centerline # {Colors.ENDC}{i}")
log.debug(f"{Colors.INFO}Date : {Colors.ENDC}{cl['date']}")
log.debug(f"{Colors.INFO}Stations: {Colors.ENDC}{cl['DATA']}")
log.debug(f"{Colors.INFO}Lignes :{Colors.ENDC}")
add_lines = "\nencoding utf-8\n"
add_lines+= f"# File generated by pyCreateTh.py version: {globalData.Version} date: {datetime.now().strftime("%Y.%m.%d %H:%M:%S")}\n"
add_lines+= f'\nsurvey {globalData.SurveyPrefixName}{i:02d}_{sanitize_filename(cl['date'])} -title "{fileTitle} Explo num {i:02d}"'
cl['lines'] = [add_lines] + cl['lines'] + ["endsurvey"]
with open(str(fileName), "w+", encoding="utf-8") as f:
for line in cl['lines']:
log.debug(line)
f.write(f"{line}\n")
f.write(f"\n\n#############################################################################################")
f.write(f"\n# Originals data file : {args.file}")
if globalData.error_count == 0 :
f.write(f"\n# Conversion with pyCreateTh version {globalData.Version}, the {datetime.now().strftime("%Y.%m.%d %H:%M:%S")}, without error")
else :
f.write(f"\n# Conversion with pyCreateTh version {globalData.Version}, the {datetime.now().strftime("%Y.%m.%d %H:%M:%S")}, with {globalData.error_count} error(s)")
f.write(f"\n#############################################################################################\n\n")
for line in source_content.splitlines():
f.write(f"# {line}\n")
log.debug(f"{Colors.INFO}------------------------------------------------------------------------------------------------------------------{Colors.ENDC}")
# Ajouter les données de la section à la liste
if len(cl['DATA']) > 0 :
listStationSectionFixed, listStationSection, dfDATA = station_list_th(cl, listStationSection, listStationSectionFixed, fixPoints, currentSurveyName)
# print(f"Explo {i}, dfDATA : {dfDATA}")
# print(listStationSection)
StatCreateFolder, stat, totReadMeErrorDat, thread2 = create_th_folders(
fileName,
TARGET = None,
PROJECTION= args.proj,
SCALE = args.scale,
UPDATE = args.update,
CONFIG_PATH = "",
totReadMeError = totReadMeErrorDat,
args_file = args.file,
proj = args.proj.lower())
threads += thread2
log.info(f"File: {Colors.ENDC}{currentSurveyName}{Colors.INFO}, compilation successful, length: {Colors.ENDC}{stat["length"]}m{Colors.INFO}, depth: {Colors.ENDC}{stat["depth"]}m")
totReadMe += f"\t{currentSurveyName} compilation successful length: {stat["length"]} m, depth: {stat["depth"]} m\n"
if not StatCreateFolder :
totMapsPlan += f"\t{plan}MP-{currentSurveyName}-Plan-tot@{currentSurveyName}\n\t{plan}break\n"
totMapsExtended += f"\t{extended}MC-{currentSurveyName}-Extended-tot@{currentSurveyName}\n\t{extended}break\n"
surveyCount += 1
totdata +=f"\tinput Data/{currentSurveyName}/{currentSurveyName}-tot.th\n"
_destination = fileName[:-3] + "\\Sources"
destination_path = os.path.join(_destination, os.path.basename(fileName))
shutil.move(fileName, destination_path)
bar(1)
# pd.set_option("display.max_rows", None)
# pd.set_option("display.max_columns", None)
# pd.set_option("display.width", None)
# print(f"{Colors.DEBUG}listStationSection : {Colors.ENDC}{listStationSection}")
#################################################################################################
# Gestion des equates
#################################################################################################
totdata +=f"\n"
_stationList = listStationSection.copy()
# On numérote les doublons de Survey_Name pour chaque StationName
_stationList['Survey_Number'] = _stationList.groupby('StationName').cumcount() + 1
# print(f"{Colors.DEBUG}_stationList : {Colors.ENDC}{_stationList}")
# On pivote le tableau pour que chaque Survey_Name devienne une colonne
tableau_pivot = _stationList.pivot(index='StationName', columns='Survey_Number', values='Survey_Name_01')
tableau_pivot.columns = [f'Survey_Name_{i}' for i in tableau_pivot.columns]
# print(f"{Colors.DEBUG}tableau_pivot : {Colors.ENDC}{tableau_pivot}{Colors.DEBUG} in {Colors.ENDC}{currentSurveyName}")
totdata +=f"\n\t## equates list:\n"
if 'Survey_Name_2' in tableau_pivot.columns:
# On réinitialise l'index pour avoir StationName comme colonne normale
tableau_pivot = tableau_pivot.reset_index()
tableau_equate = tableau_pivot[tableau_pivot['Survey_Name_2'].notna()]
log.info(f"Total 'equates' founds: {Colors.ENDC}{len(tableau_equate)}{Colors.INFO} in {Colors.ENDC}{currentSurveyName}")
# print(f"{Colors.DEBUG}tableau_equate : {Colors.ENDC}{tableau_equate}")
# print(f"{Colors.DEBUG}fixePoints : {Colors.ENDC}{fixPoints}{Colors.DEBUG} in {Colors.ENDC}{currentSurveyName}")
# Pour chaque ligne du tableau
for _, row in tableau_equate.iterrows():
station = row['StationName']
# On récupère tous les Survey_Name non vides (NaN exclus)
surveys = [row[col] for col in tableau_equate.columns if col.startswith('Survey_Name') and pd.notna(row[col])]
# Pour chaque paire unique (i < j), on écrit la ligne 'equate'
for i in range(len(surveys)):
for j in range(i + 1, len(surveys)):
totdata +=f"\tequate {station}@{surveys[i]}.{surveys[i]} {station}@{surveys[j]}.{surveys[j]}\n"
else:
log.info(f"No 'equates' found in {Colors.ENDC}{currentSurveyName}")
totdata +=f"\n\t## Maps list:\n\t{maps}input {SurveyTitle}-maps.th\n"
if totReadMeErrorDat == "" : totReadMeErrorDat += "\tThis file has no errors, perfect!\n"
for index, row in listStationSectionFixed.iterrows():
# log.info(f"Fixed station : {Colors.ENDC}{row['Station_Fix']}{Colors.INFO}, Survey : {Colors.ENDC}{row['Survey_Name']}")
totReadMeFixPoint += f"\tFixed station : {row['Station_Fix']}, Survey : {row['Survey_Name']}\n"
config_vars = {
'fileName': SurveyTitle,
'caveName': SurveyTitle.replace("_", " "),
'Author': globalData.Author,
'Copyright': globalData.Copyright,
'Scale' : args.scale,
'Target' : "TARGET",
'mapComment' : globalData.mapComment,
'club' : globalData.club,
'thanksto' : globalData.thanksto,
'datat' : globalData.datat,
'wpage' : globalData.wpage,
'cs' : coordsyst if coordsyst != "" else globalData.cs,
'totData' : totdata,
'maps' :maps,
'plan': plan,
'XVIscale': globalData.XVIScale,
'extended': extended,
'configPath' : "",
'other_scraps_plan' : totMapsPlan,
'readMeList' : totReadMe,
'errorList' : totReadMeErrorDat,
'fixPointList' : totReadMeFixPoint,
'other_scraps_extended' : totMapsExtended,
'file_info' : f"# File generated by pyCreateTh.py version: {globalData.Version} date: {datetime.now().strftime("%Y.%m.%d-%H:%M:%S")}",
}
DEST_PATH = os.path.dirname(ENTRY_FILE) + '/' + SurveyTitle
# from pprint import pprint
# pprint(config_vars, width=120, depth=2)
update_template_files(DEST_PATH + '/template.thconfig', config_vars, DEST_PATH + '/' + SurveyTitle + '.thconfig')
update_template_files(DEST_PATH + '/template-tot.th', config_vars, DEST_PATH + '/' + SurveyTitle + '-tot.th')
update_template_files(DEST_PATH + '/template-maps.th', config_vars, DEST_PATH + '/' + SurveyTitle + '-maps.th')
#################################################################################################
# Final therion compilation #
#################################################################################################
if globalData.finalTherionExe == True:
FILE = DEST_PATH + '/' + SurveyTitle + '.thconfig'
t = compile_file(FILE, therion_path=globalData.therionPath)
threads.append(t)
for thread in threads: # Attendre que tous les threads se terminent
thread.join()
logfile = (DEST_PATH + '/therion.log').replace("\\", "/")
with open(logfile, 'r') as f:
content = f.read()
# print(content)
stat = get_stats_from_log(content)
if stat["length"] != 0.0 and stat["depth"] != 0.0 :
totReadMe += f"\tFinal compilation successful length: {stat["length"]} m, depth: {stat["depth"]} m\n"
log.info(f"Final compilation successful length: {Colors.ENDC}{stat["length"]}{Colors.INFO} m, depth: {Colors.ENDC}{stat["depth"]}{Colors.INFO} m")
else :
totReadMe += f"\tFinal compilation error, check log file\n"
log.error(f"Final compilation error, check log file")
config_vars['readMeList'] = totReadMe
update_template_files(DEST_PATH + '/template-readme.md', config_vars, DEST_PATH +'/' + SurveyTitle + '-readme.md')
return _stationList, SurveyTitle, totReadMeError, threads
#################################################################################################
# Convertit un fichier .dat en fichiers .th #
#################################################################################################
def dat_to_th_files (ENTRY_FILE, fixPoints = [], crs_wkt = "", CONFIG_PATH = "", totReadMeError = "", bar=None) :
"""
Convertit un fichier .dat en fichiers .th
Args:
ENTRY_FILE (str): Le chemin vers le fichier .dat d'entrée.
fixPoints (list, optional): Liste des points de fixation. Defaults to [].
crs_wkt (str, optional): Le système de référence spatiale en WKT. Defaults to "".
CONFIG_PATH (str, optional): Le chemin vers le fichier de configuration. Defaults to "".
Returns:
tuple: Un tuple contenant un DataFrame des stations et le nom du survey.
"""
# Détecter la fin de section (FF CR LF qui correspond à \x0c\r\n)
section_separator = '\x0c'
shortCurentFile = os.path.basename(ENTRY_FILE)
#################################################################################################
# 1 : Lecture du fichier dat #
#################################################################################################
content, totReadMe, enc = load_text_file_utf8(ENTRY_FILE, shortCurentFile)
#################################################################################################
# Séparer les sections #
#################################################################################################
sections = content.split(section_separator)
# Listes pour stocker les données
data = []
unique_id = 1
totdata = f"\t## Input list:\n"
totMapsPlan = ""
totMapsExtended = ""
totReadMeErrorDat = ""
totReadMeFixPoint = f"cs {crs_wkt}\n"
threads = []
# Tableau global pour stocker toutes les stations
stationList = pd.DataFrame(columns=['StationName', 'Survey_Name_01', 'Survey_Name_02'])
stationList_Fixed = pd.DataFrame(columns=['StationName', 'Survey_Name'])
section0 = True;
#################################################################################################
# 2 : Boucle pour lire les surveys au format dat #
#################################################################################################
for section in sections:
listStationSection = pd.DataFrame(columns=['StationName', 'Survey_Name'])
listStationSection_Fixed = pd.DataFrame(columns=['StationName', 'Survey_Name'])
if not section.strip():
continue # ignorer les sections vides
# Dictionnaire pour stocker les infos de la section courante
section_data = {
'ID': unique_id,
'SURVEY_TITLE': None,
'SURVEY_NAME': None,
'SURVEY_DATE': None,
'COMMENT' : None,
'SURVEY_TEAM': None,
'DECLINATION': None,
'FORMAT': None,
'CORRECTIONS' : None,
"CORRECTIONS2": None,
"DISCOVERY": None,
"PREFIX": None,
'DATA' : [],
'STATION': [],
'STATION_FIXED': [],
'SOURCE' : []
}
regex_patterns = {
"DECLINATION": r"DECLINATION:\s*([\d\.\-]+)",
"FORMAT": r"FORMAT:\s*([A-Za-z]+)",
"CORRECTIONS": r"CORRECTIONS:\s*([\d\.\-]+\s+[\d\.\-]+\s+[\d\.\-]+)",
"CORRECTIONS2": r"CORRECTIONS2:\s*([\d\.\-]+\s+[\d\.\-]+)",
"DISCOVERY": r"DISCOVERY:\s*(\d+\s+\d+\s+\d+)",
"PREFIX": r"PREFIX:\s*(\S+)"
}
# Parcourir les lignes de la section
lines = section.split('\n')
section_data['SOURCE'] = section
NextLineSurveyTeam = False
if lines:
if section0 :
section_data['SURVEY_TITLE'] = lines[0].strip()
lines = lines[1:] # Supprimer la première ligne
section0 = False
else :
lines = lines[1:]
section_data['SURVEY_TITLE'] = lines[0].strip()
lines = lines[1:] # Supprimer la première ligne
jumpLine = False
for line in lines:
line = line.strip()
if jumpLine == True :
jumpLine = False
line = line.strip()
elif line.startswith('SURVEY NAME:'):
section_data['SURVEY_NAME'] = sanitize_filename(line.split(':', 1)[1].strip())
elif line.startswith('SURVEY DATE:'):
# current_field = 'DATE'
# Séparer la date et le commentaire
date_parts = line.split(':', 1)[1].strip().split('COMMENT:', 1)
date = date_parts[0].strip()
mois, jour, annee = date.split()
date_convertie = f"{int(annee):04d} {int(mois):02d} {int(jour):02d}"
section_data['SURVEY_DATE'] = date_convertie
if section_data['SURVEY_DATE'] == None or section_data['SURVEY_DATE'] == '' :
section_data['SURVEY_DATE'] = "2000 01 01"
log.warning(f"Survey {Colors.ENDC}{section_data['SURVEY_NAME']}{Colors.WARNING} with no date, add default date 2000 01 01 ")
if len(date_parts) > 1:
section_data['COMMENT'] = date_parts[1].strip()
elif line.startswith('SURVEY TEAM:'):
NextLineSurveyTeam = True
line.strip()
elif NextLineSurveyTeam == True :
NextLineSurveyTeam = False
val = line.strip()
if val.count(' ') >= 2:
val = val.replace(' ', '/', 1)
section_data['SURVEY_TEAM'] = val
elif line.startswith('DECLINATION:'):
for champ, pattern in regex_patterns.items():
match = re.search(pattern, line)
if match:
section_data[champ] = match.group(1).strip()
jumpLine = True # Sauter une ligne après la ligne DECLINATION
else :
if line.strip() != '' :
section_data['DATA'].append(line.strip())
else :
line.strip()
# Ajouter les données de la section à la liste
if len(section_data['DATA']) > 0 :
listStationSection_Fixed, listStationSection, dfDATA = station_list_dat(section_data, listStationSection, listStationSection_Fixed, fixPoints, section_data['SURVEY_NAME'])
section_data['STATION'] = listStationSection
section_data['STATION_FIXED'] = listStationSection_Fixed
data.append(section_data)
unique_id += 1
#################################################################################################
# Détecter les surveys avec plusieurs points de départ #
#################################################################################################
# points = points_uniques(section_data, crs_wkt)
# if len(points) > 1 :
# log.warning(f"Points {Colors.ENDC}{points}{Colors.WARNING} uniques dans la section {Colors.ENDC}{section_data['SURVEY_NAME']}")
# # globalData.error_count += 1
# else :
# log.debug(f"Points {Colors.ENDC}{points}{Colors.DEBUG} uniques dans la section {section_data['SURVEY_NAME']}")
#################################################################################################
# Grouper les sections ayant même date team et un point commun #
#################################################################################################
val1 = len(data)
# duplicates = find_duplicates_by_date_and_team(data)
duplicates = find_duplicates_by_date(data)
data = merge_duplicate_surveys(data, duplicates)
val2 = val1 - len(data)
if val2 != 0 :
log.info(f"Read dat file: {Colors.ENDC}{shortCurentFile}{Colors.INFO} with {Colors.ENDC}{len(data)}{Colors.GREEN}{Colors.INFO} survey(s) and merged {Colors.ENDC}{val2}")
bar(val2)
else :
log.info(f"Read dat file: {Colors.ENDC}{shortCurentFile}{Colors.INFO} with {Colors.ENDC}{len(data)}{Colors.INFO} survey(s)")
#################################################################################################
# Créer le dossier pour les fichiers convertis #
#################################################################################################
if data[0]['SURVEY_TITLE'] !="" :
SurveyTitle = sanitize_filename(data[0]['SURVEY_TITLE'])
folderDest = os.path.dirname(ENTRY_FILE) + "\\" + SurveyTitle
if os.path.isdir(folderDest):
SurveyTitle = sanitize_filename(os.path.basename(ENTRY_FILE[:-4]))
else :
SurveyTitle = sanitize_filename(os.path.basename(ENTRY_FILE[:-4]))
folderDest = os.path.dirname(ENTRY_FILE) + "\\" + SurveyTitle
copy_template_if_not_exists(globalData.templatePath,folderDest)
if args.file[-3:].lower() != "dat" :
_destination = folderDest + "\\config.thc"
# print(f"destination_path : {_destination}")
os.remove(_destination)
# Trie des données par date
data = sorted(data, key=lambda x: x['SURVEY_DATE'] or "")
#################################################################################################
# 3 : Boucle pour créer les surveys au format th #
#################################################################################################
surveyCount = 1
# totReadMe += f"* Source file: {os.path.basename(ENTRY_FILE)}\n"
proj = args.proj.lower()
values = {
"none": ("# ", "# ", "# "),
"plan": ("", "", "# "),
"extended": ("", "# ", ""),
}
maps, plan, extended = values.get(proj, ("", "", ""))
for _line in data :
# currentSurveyName = f"{globalData.typeSurveyName}{surveyCount:02d}"
# currentSurveyName = f"{globalData.typeSurveyName}{surveyCount:02d}_{sanitize_filename(_line['SURVEY_NAME'])}"
currentSurveyName = f"{globalData.SurveyPrefixName}{surveyCount:02d}_{sanitize_filename(_line['SURVEY_DATE'])}"
output_file = f"{folderDest}\\Data\\{currentSurveyName}.th"
#################################################################################################
# gestion des CORRECTIONS #
#################################################################################################
_CorrectionValues = [float(val) for val in _line['CORRECTIONS'].strip().split()]
if all(val == 0.0 for val in _CorrectionValues) :
_corrections = ""
else :
_corrections = f"\t\t# Corrections: {_CorrectionValues[0]} {_CorrectionValues[1]} {_CorrectionValues[2]}, not yet implemented\n"
log.error(f"Corrections: {Colors.ENDC}{_CorrectionValues[0]} {_CorrectionValues[1]} {_CorrectionValues[2]}{Colors.ERROR}, not yet implemented in {Colors.ENDC}{currentSurveyName}")
totReadMeError += f"\tCorrections: {_CorrectionValues[0]} {_CorrectionValues[1]} {_CorrectionValues[2]}, not yet implemented in {currentSurveyName}\n"
globalData.error_count += 1
if _line['CORRECTIONS2'] != None :
_CorrectionValues3 = [float(val) for val in _line['CORRECTIONS2'].strip().split()]
if all(val == 0.0 for val in _CorrectionValues) :
_CorrectionValues3 = ""
else :
log.error(f"Corrections2: {Colors.ENDC}{_CorrectionValues[0]} {_CorrectionValues[1]} {_CorrectionValues[2]}{Colors.ERROR}, not yet implemented in {Colors.ENDC}{currentSurveyName}")
totReadMeError += f"\tCorrections2: {_CorrectionValues[0]} {_CorrectionValues[1]} {_CorrectionValues[2]}, not yet implemented in {currentSurveyName}\n"
globalData.error_count += 1
if _line['DISCOVERY'] != None :
date = _line['DISCOVERY'].strip()
mois, jour, annee = date.split()
discovery = f"{int(annee):04d} {int(mois):02d} {int(jour):02d}"
else :
discovery = f"{_line['SURVEY_DATE']} # '????'"
if _line['PREFIX'] != None :
log.error(f"PREFIX: {Colors.ENDC}{_line['PREFIX']}, not yet implemented in {Colors.ENDC}{currentSurveyName}")
totReadMeError += f"\tPREFIX: {_line['PREFIX']}, not yet implemented in {currentSurveyName}\n"
globalData.error_count += 1
SurveyNameCount = {
'surveyCount' :f"{currentSurveyName}",
'SURVEY_NAME': _line['SURVEY_NAME']
}
#################################################################################################
# gestion des DATA #
#################################################################################################
stationList_Fixed, stationList, dfDATA = station_list_dat(_line, stationList, stationList_Fixed, fixPoints, currentSurveyName)
headerData = dfDATA.iloc[0].tolist()
#################################################################################################
# Recherche des points fixes (entrées)
#################################################################################################
fixPoint =""
# Extraire les noms des stations depuis dfDATA
stations_from = set(dfDATA.iloc[:, 0]) # Colonne 'FROM'
stations_to = set(dfDATA.iloc[:, 1]) # Colonne 'TO'
all_stations = stations_from.union(stations_to)
# Filtrer fixPoints pour garder seulement ceux présents dans dfDATA
list_common_points = [point for point in fixPoints if point[0] in all_stations]
# Afficher le résultat
# print(list_common_points)
if len(list_common_points) >= 1 :
fixPoint += f"\t\tcs {crs_wkt}\n"
for point in list_common_points :
totReadMeFixPoint += f"\tFix point: {point[0]} [{point[2]:.2f} m, {point[3]:.2f} m, {point[4]:.2f} m], in {currentSurveyName}\n"
if point[1] == 'm' :
fixPoint += f"\t\tfix {point[0]} {point[2]:.2f} {point[3]:.2f} {point[4]:.3f}\n"
elif point[1] == 'f' :
fixPoint += f"\t\tfix {point[0]} {point[2]*0.3048:.2f} {point[3]*0.3048:.2f} {point[4]*0.3048:.2f} # Conversion feet - meter\n"
fixPoint += f'\t\tstation {point[0]} "{point[0]}" entrance\n'
#################################################################################################
# Gestion des formats
#################################################################################################
dataFormat, length, compass, clino, totReadMeErrorDat = dat_survey_format_extract(_line, headerData, currentSurveyName, shortCurentFile, totReadMeErrorDat)
if "grads" in compass:
_compass = "grads"
else:
_compass = "degree"
#################################################################################################
# Gestion des formats
#################################################################################################
with open(str(output_file), "w+", encoding="utf-8") as f:
f.write(globalData.thFileDat.format(
VERSION = globalData.Version,
DATE=datetime.now().strftime("%Y.%m.%d-%H:%M:%S"),
# SURVEY_NAME = sanitize_filename(_line['SURVEY_NAME']),
SURVEY_NAME = f"{currentSurveyName}",
SURVEY_TITLE = _line['SURVEY_NAME'].replace("_", " "),
SURVEY_DATE = _line['SURVEY_DATE'],
SURVEY_TEAM = _line['SURVEY_TEAM'],
FORMAT = _line['FORMAT'],
COMPASS = compass,
LENGTH = length,
CLINO = clino,
DATA_FORMAT = dataFormat,
CORRECTIONS =_corrections,
DECLINATION = f"\t\tdeclination {_line['DECLINATION']} {_compass}\n" if (crs_wkt == "" and _line['DECLINATION'] != 0.0) else "",
DATA = formated_station_list(dfDATA, dataFormat, length, shortCurentFile),
COMMENT = sanitize_filename(_line['SURVEY_NAME'] + " " + _line['COMMENT']).replace('"', "'").replace('_', " "),
FIX_POINTS = fixPoint,
EXPLO_DATE = discovery,
EXPLO_TEAM = f"{_line['SURVEY_TEAM']} # '????'",
SOURCE = '\n'.join('# ' + line for line in _line['SOURCE'].splitlines()),
)
)
totdata +=f"\tinput Data/{currentSurveyName}/{currentSurveyName}-tot.th\n"
log.info(f"Therion file : {Colors.ENDC}{safe_relpath(output_file)}{Colors.GREEN} created from {Colors.ENDC}{os.path.basename(ENTRY_FILE)}")
#################################################################################################
# Création des dossiers
#################################################################################################
_Config_PATH = CONFIG_PATH + "../../"
StatCreateFolder, stat, totReadMeErrorDat, thread2 = create_th_folders(
ENTRY_FILE = output_file,
PROJECTION = args.proj,
SCALE = args.scale,
UPDATE = args.update,
CONFIG_PATH = _Config_PATH,
totReadMeError = totReadMeErrorDat,
args_file = args.file,
proj = args.proj.lower()
)
threads += thread2
log.info(f"File: {Colors.ENDC}{currentSurveyName}{Colors.INFO}, compilation successful, length: {Colors.ENDC}{stat["length"]}m{Colors.INFO}, depth: {Colors.ENDC}{stat["depth"]}m")
totReadMe += f"\t{currentSurveyName} compilation successful length: {stat["length"]} m, depth: {stat["depth"]} m\n"
_destination = output_file[:-3] + "\\Sources"
destination_path = os.path.join(_destination, os.path.basename(output_file))
shutil.move(output_file, destination_path)
if args.file[-3:].lower() != "dat" :
_destination = output_file[:-3] + "\\config.thc"
destination_path = os.path.join(_destination, os.path.basename(output_file))
# print(f"destination_path : {_destination}")
os.remove(_destination)
if not StatCreateFolder :
totMapsPlan += f"\t{plan}MP-{currentSurveyName}-Plan-tot@{currentSurveyName}\n\t{plan}break\n"
totMapsExtended += f"\t{extended}MC-{currentSurveyName}-Extended-tot@{currentSurveyName}\n\t{extended}break\n"
surveyCount += 1
if globalData.error_count > 0:
bar.text(f"{Colors.INFO}file: {Colors.ENDC}{os.path.basename(ENTRY_FILE)[:-4]}{Colors.INFO}, survey: {Colors.ENDC}{currentSurveyName}{Colors.ERROR}, error: {Colors.ENDC}{globalData.error_count}")
else :
bar.text(f"{Colors.INFO}file: {Colors.ENDC}{os.path.basename(ENTRY_FILE)[:-4]}{Colors.INFO}, survey: {Colors.ENDC}{currentSurveyName}")
bar()
#################################################################################################
# 4 : Finalisation (remplissage des -tot.th et maps.th #
#################################################################################################
#################################################################################################
# Gestion des equates
#################################################################################################
totdata +=f"\n"
_stationList = stationList.copy()
# On numérote les doublons de Survey_Name pour chaque StationName
_stationList['Survey_Number'] = _stationList.groupby('StationName').cumcount() + 1
# print(_stationList)
# On pivote le tableau pour que chaque Survey_Name devienne une colonne
tableau_pivot = _stationList.pivot(index='StationName', columns='Survey_Number', values='Survey_Name_01')
tableau_pivot.columns = [f'Survey_Name_{i}' for i in tableau_pivot.columns]
# print(f"tableau_pivot: {Colors.ENDC}{tableau_pivot}{Colors.INFO} in {Colors.ENDC}{ENTRY_FILE}")
totdata +=f"\n\t## equates list:\n"
if 'Survey_Name_2' in tableau_pivot.columns:
# On réinitialise l'index pour avoir StationName comme colonne normale
tableau_pivot = tableau_pivot.reset_index()
tableau_equate = tableau_pivot[tableau_pivot['Survey_Name_2'].notna()]
log.info(f"Total '{Colors.ENDC}equates{Colors.INFO}' founds : {Colors.ENDC}{len(tableau_equate)}{Colors.INFO} in {Colors.ENDC}{shortCurentFile}")
# print(tableau_equate)
# print(f"fixePoints : {Colors.ENDC}{fixed_names}{Colors.INFO} in {Colors.ENDC}{ENTRY_FILE}")
# Pour chaque ligne du tableau
for _, row in tableau_equate.iterrows():
station = row['StationName']
# On récupère tous les Survey_Name non vides (NaN exclus)
surveys = [row[col] for col in tableau_equate.columns if col.startswith('Survey_Name') and pd.notna(row[col])]
# Pour chaque paire unique (i < j), on écrit la ligne 'equate'
for i in range(len(surveys)):
for j in range(i + 1, len(surveys)):
totdata +=f"\tequate {station}@{surveys[i]}.{surveys[i]} {station}@{surveys[j]}.{surveys[j]}\n"
else:
log.info(f"No '{Colors.ENDC}equates{Colors.INFO}' found in {Colors.ENDC}{ENTRY_FILE}")
totdata +=f"\n\t## Maps list:\n\t{maps}input {SurveyTitle}-maps.th\n"
if totReadMeErrorDat == "" : totReadMeErrorDat += "\tNo errors in the file, that's excellent !\n"
stationList_Fixed = stationList_Fixed.drop_duplicates()
for index, row in stationList_Fixed.iterrows():
# log.info(f"Fixed station: {Colors.ENDC}{row['Station_Fix']}{Colors.INFO}, survey: {Colors.ENDC}{row['Survey_Name']}")
totReadMeFixPoint += f"\tFixed station: {row['Station_Fix']}, Survey: {row['Survey_Name']}\n"
config_vars = {
'fileName': SurveyTitle,
'caveName': SurveyTitle.replace("_", " "),
'Author': globalData.Author,
'Copyright': globalData.Copyright,
'Scale' : args.scale,
'Target' : "TARGET",
'mapComment' : globalData.mapComment,
'club' : globalData.club,
'thanksto' : globalData.thanksto,
'datat' : globalData.datat,
'wpage' : globalData.wpage,
'cs' : crs_wkt if crs_wkt != "" else globalData.cs,
'totData' : totdata,
'maps' : maps,
'plan': plan,
'XVIscale':globalData.XVIScale,
'extended': extended,
'configPath' : CONFIG_PATH,
'other_scraps_plan' : totMapsPlan,
'readMeList' : totReadMe,
'errorList' : totReadMeErrorDat,
'fixPointList' : totReadMeFixPoint,
'other_scraps_extended' : totMapsExtended,
'file_info' : f"# File generated by pyCreateTh.py version: {globalData.Version} date: {datetime.now().strftime("%Y.%m.%d-%H:%M:%S")}",
}
DEST_PATH = os.path.dirname(ENTRY_FILE) + '/' + SurveyTitle
update_template_files(DEST_PATH + '/template.thconfig', config_vars, DEST_PATH + '/' + SurveyTitle + '.thconfig')
update_template_files(DEST_PATH + '/template-tot.th', config_vars, DEST_PATH + '/' + SurveyTitle + '-tot.th')
update_template_files(DEST_PATH + '/template-maps.th', config_vars, DEST_PATH + '/' + SurveyTitle + '-maps.th')
#################################################################################################
# Final therion compilation #
#################################################################################################
if globalData.finalTherionExe == True :
FILE = DEST_PATH + '/' + SurveyTitle + '.thconfig'
t = compile_file(FILE, therion_path=globalData.therionPath)
threads.append(t)
for thread in threads: # Attendre que tous les threads se terminent
thread.join()
logfile = (DEST_PATH + '/therion.log').replace("\\", "/")
with open(logfile, 'r') as f:
content = f.read()
# print(content)
stat = get_stats_from_log(content)
if stat["length"] != 0.0 and stat["depth"] != 0.0 :
totReadMe += f"\tFinal compilation successful length: {stat["length"]} m, depth: {stat["depth"]} m\n"
log.info(f"Final compilation successful length: {Colors.ENDC}{stat["length"]}{Colors.INFO} m, depth: {Colors.ENDC}{stat["depth"]}{Colors.INFO} m")
else :
totReadMe += f"\tFinal compilation error, check log file\n"
log.error(f"Final compilation error, check log file")
config_vars['readMeList'] = totReadMe
update_template_files(DEST_PATH + '/template-readme.md', config_vars, DEST_PATH +'/' + SurveyTitle + '-readme.md')
stationList["Survey_Name_02"] = SurveyTitle
totReadMeError += totReadMeErrorDat
return stationList, SurveyTitle, totReadMeError, threads
#################################################################################################
def wait_until_file_is_released(filepath, timeout=30):
"""Wait until a file is released (i.e., not locked by another process).
Args:
filepath (str): The path to the file to check.
timeout (int, optional): The maximum time to wait in seconds. Defaults to 30.
Returns:
bool: True if the file is released, False if the timeout is reached.
"""
start = time.time()
while True:
try:
with open(filepath, "rb"):
return True
except PermissionError:
if time.time() - start > timeout:
log.Error(f"Timeout: The file remains locked after {Colors.ENDC}{timeout}{Colors.ERROR} secondes: {Colors.ENDC}{filepath}")
time.sleep(0.1) # attend 100 ms
#################################################################################################
# main function #
#################################################################################################
if __name__ == u'__main__':
start_time = datetime.now()
threads = []
fileTitle = ""
_fileTitle = ""
#################################################################################################
# Parse arguments #
#################################################################################################
parser = argparse.ArgumentParser(
description=f"{Colors.BLUE}Create a skeleton folder and th, th2 files with scraps from *.tro, *.mak, *.dat, *.th Therion files, version: {Colors.ENDC}{globalData.Version}\n",
formatter_class=argparse.RawDescriptionHelpFormatter)
parser.print_help = colored_help.__get__(parser)
parser.add_argument("--file", help="the file (*.th, *.mak, *.dat, *.tro) to perform e.g. './Therion_file.th'", default="")
parser.add_argument("--proj", choices=['All', 'Plan', 'Extended', 'None'], help="the th2 files scrap projection to produce, default: All", default="All")
parser.add_argument("--scale", help="scale for the pdf layout exports, default value: 1000 (i.e. xvi files scale is 100)", default="1000")
parser.add_argument("--update", help="th2 files update mode (only for th input files, no folders created)", action="store_true", default=False)
parser.epilog = (
f"{Colors.GREEN}Please, complete {Colors.BLUE}config.ini{Colors.GREEN} in {Colors.BLUE}FILE{Colors.GREEN} folder or in script folder for personal configuration{Colors.ENDC}\n"
f"{Colors.GREEN}If no argument: {Colors.BLUE} files selection by a windows\n{Colors.ENDC}\n"
f"{Colors.BLUE}Examples:{Colors.ENDC}\n"
f"\t> python pyCreateTh.py ./Tests/Entree.th --scale 1000\n"
f"\t> python pyCreateTh.py Entree.th\n"
f"\t> python pyCreateTh.py\n\n")
args = parser.parse_args()
if args.file == "":
args.file = select_file_tk_window()
# print(f"Selected file : {args.file}")
output_log = splitext(abspath(args.file))[0] + ".log"
log = setup_logger(output_log, debug_log)
# log.debug("Ceci est un message de debug")
# log.info("Tout va bien")
# log.warning("Attention, possible souci")
# log.error("Une erreur est survenue")
# log.critical("Erreur critique !")
if os.name == 'posix': os.system('clear') # Linux, MacOS
elif os.name == 'nt': os.system('cls')# Windows
else: print("\n" * 100)
#################################################################################################
# Reading config.ini #
#################################################################################################
config_file = load_config(args)
#################################################################################################
# titre #
#################################################################################################
titre_largeur = 150
bordure = "#" * titre_largeur + Colors.ENDC
ansi_escape = re.compile(r'\x1b\[[0-9;]*m')
def pad_line(texte, center=False):
# Supprimer les séquences ANSI pour le calcul de longueur visuelle
visible_len = len(ansi_escape.sub('', texte))
espace_total = titre_largeur - visible_len - 2 # 2 pour les * à gauche et droite
if center:
left = espace_total // 2
right = espace_total - left
return f"#{' ' * left}{texte}{' ' * right}{Colors.ENDC}{Colors.INFO}#"
else:
return f"# {texte}{' ' * max(0, espace_total - 1)}{Colors.INFO}#"
_titre = [
bordure,
pad_line(f"{Colors.BOLD}{Colors.YELLOW}Files conversion th, dat, mak, tro and trox to therion files and folders", center=True),
pad_line(f"Script pyCreateTh by : {Colors.BLUE}alexandre.pont@yahoo.fr"),
pad_line(f"Version : {Colors.ENDC}{globalData.Version}"),
pad_line(f"Input file : {Colors.ENDC}{safe_relpath(args.file)}"),
pad_line(f"Output folder : {Colors.ENDC}{safe_relpath(splitext(abspath(args.file))[0])}"),
pad_line(f"Log file : {Colors.ENDC}{os.path.basename(output_log)}"),
pad_line(f"Config file: {Colors.ENDC}{safe_relpath(config_file)}"),
pad_line(""),
bordure
]
for line in _titre:
log.info(line)
if args.file == "":
log.critical(f"No valid file selected, try again")
exit(0)
#################################################################################################
# Fichier TH #
#################################################################################################
if args.file[-2:].lower() == "th" :
flagErrorCompile, stat, totReadMeError, thread2 = create_th_folders(
ENTRY_FILE = abspath(args.file),
TARGET = None,
PROJECTION= args.proj,
SCALE = args.scale,
UPDATE = args.update,
CONFIG_PATH = "",
args_file = args.file,
proj = args.proj.lower())
threads += thread2
fileTitle = sanitize_filename(os.path.basename(args.file))[:-3]
#################################################################################################
# Fichier MAK #
#################################################################################################
elif args.file[-3:].lower() == "mak" :
SurveyTitleMak = sanitize_filename(os.path.basename(abspath(args.file))[:-4])
DEST_PATH = os.path.dirname(args.file) + '/' + SurveyTitleMak
if os.path.isdir(DEST_PATH):
log.critical(f"The folder {Colors.ENDC}{SurveyTitleMak}{Colors.ERROR}{Colors.BOLD}, all ready exist : update mode is not possible for mak files")
exit(0)
fileTitle, thread2 = mak_to_th_file(abspath(args.file))
threads += thread2
#################################################################################################
# Fichier DAT #
#################################################################################################
elif args.file[-3:].lower() == "dat" :
_ConfigPath = "./"
QtySections = 0
ABS_file = abspath(args.file)
content, val, enc = load_text_file_utf8(ABS_file, os.path.basename(ABS_file))
section = content.split('\x0c')
QtySections += len(section)
lines = section[0].split('\n')
if lines[0] !="" :
SurveyTitleDat = sanitize_filename(lines[0])
folderDest = os.path.dirname(args.file) + "\\" + SurveyTitleDat
else :
SurveyTitleDat = sanitize_filename(os.path.basename(args.file)[:-4])
folderDest = os.path.dirname(args.file) + "\\" + SurveyTitleDat
if os.path.isdir(folderDest):
log.critical(f"The folder {Colors.ENDC}{SurveyTitleDat}{Colors.ERROR}{Colors.BOLD}, all ready exist : update mode is not possible for mak files")
exit(0)
with alive_bar( QtySections, title=f"{Colors.GREEN}Dat to Th conversion progress: {Colors.BLUE}", length = 20, enrich_print=False,
stats=True, # Désactive les stats par défaut pour plus de lisibilité
elapsed=True, # Optionnel : masque le temps écoulé
monitor=True, # Optionnel : masque les métriques (ex: "eta")
bar="smooth" # Style de la barre (autres options: "smooth", "classic", "blocks")
) as bar:
with redirect_stdout(sys.__stdout__):
for i in range(1):
if globalData.error_count > 0:
bar.text(f"{Colors.INFO}file: {Colors.ENDC}{os.path.basename(ABS_file)[:-4]}{Colors.ERROR}, error: {Colors.ENDC}{globalData.error_count}")
else :
bar.text(f"{Colors.INFO}file: {Colors.ENDC}{os.path.basename(ABS_file)[:-4]}")
stationList, fileTitle, totReadMeError, thread2 = dat_to_th_files (ABS_file , fixPoints = [], crs_wkt = "", CONFIG_PATH = _ConfigPath, totReadMeError = "", bar = bar)
threads += thread2
bar()
#################################################################################################
# Fichier TRO #
#################################################################################################
elif args.file[-3:].lower() == "tro" :
SrcFile = abspath(args.file)
DestFile = SrcFile[:-4] + ".th"
source_content, val, encodage = load_text_file_utf8(SrcFile, os.path.basename(SrcFile))
entrance, fileTitle, coordinates, coordsyst, fle_th_fnme = convert_tro( fle_tro_fnme = SrcFile, fle_tro_encoding= encodage,
fle_th_fnme = DestFile, cavename = None, icomments = True, icoupe = False, istructure = False,
thlang = None, Errorfiles = False )
if coordsyst == None :
log.critical(f"The VisualTopo file {Colors.ENDC}{SrcFile}{Colors.ERROR}{Colors.BOLD}, have no coordinate system define. Correct it and try again")
exit(0)
content, val, encodage = load_text_file_utf8(fle_th_fnme, os.path.basename(fle_th_fnme))
if globalData.parse_tro_files_by_explo :
_centerlines = parse_therion_centerline(content)
centerlines = regroupe_date(_centerlines)
with alive_bar( len(centerlines) + 1 , title=f"{Colors.GREEN}Tro to Th conversion progress: {Colors.BLUE}", length = 20, enrich_print=False,
stats=True, # Désactive les stats par défaut pour plus de lisibilité
elapsed=True, # Optionnel : masque le temps écoulé
monitor=True, # Optionnel : masque les métriques (ex: "eta")
bar="smooth" # Style de la barre (autres options: "smooth", "classic", "blocks")
) as bar:
with redirect_stdout(sys.__stdout__):
for i in range(1):
if globalData.error_count > 0:
bar.text(f"{Colors.INFO}file: {Colors.ENDC}{os.path.basename(SrcFile)}{Colors.ERROR}, error: {Colors.ENDC}{globalData.error_count}")
else :
bar.text(f"{Colors.INFO}file: {Colors.ENDC}{os.path.basename(SrcFile)}")
stationList, fileTitle, totReadMeError, thread2 = tro_to_th_files (ENTRY_FILE = SrcFile ,
centerlines = centerlines,
entrance = entrance,
fileTitle = fileTitle,
coordinates = coordinates,
coordsyst = coordsyst,
fle_th_fnme = fle_th_fnme,
CONFIG_PATH = "",
totReadMeError = "",
bar = bar)
threads += thread2
bar()
else :
if encodage != "utf-8":
with open(str(fle_th_fnme), "w+", encoding="utf-8") as f:
f.write(content)
with open(fle_th_fnme, 'a', encoding='utf-8') as file: # Données originales en commentaire dans le fichier th
file.write(f"\n\n#############################################################################################")
file.write(f"\n# Originals data file : {args.file}")
if globalData.error_count == 0 :
file.write(f"\n# Conversion with pyCreateTh version {globalData.Version}, the {datetime.now().strftime("%Y.%m.%d %H:%M:%S")}, without error")
else :
file.write(f"\n# Conversion with pyCreateTh version {globalData.Version}, the {datetime.now().strftime("%Y.%m.%d %H:%M:%S")}, with {globalData.error_count} error(s)")
file.write(f"\n#############################################################################################\n\n")
for line in source_content.splitlines():
file.write(f"# {line}\n")
flagErrorCompile, stat, totReadMeError, thread2 = create_th_folders(
ENTRY_FILE = fle_th_fnme,
TARGET = None,
PROJECTION= args.proj,
SCALE = args.scale,
UPDATE = args.update,
CONFIG_PATH = "",
args_file = args.file,
proj = args.proj.lower() )
threads += thread2
fileTitle = sanitize_filename(os.path.basename(fle_th_fnme)[:-3])
if os.path.isfile(fle_th_fnme):
os.remove(fle_th_fnme)
#################################################################################################
# Fichier TROX #
#################################################################################################
elif args.file[-4:].lower() == "trox" :
SrcFile = abspath(args.file)
analyse_xml_balises(SrcFile)
fileTitle = sanitize_filename(os.path.basename(SrcFile)[:-4])
#################################################################################################
# Autres types #
#################################################################################################
else :
log.error(f"file {Colors.ENDC}{safe_relpath(args.file)}{Colors.ERROR} not yet supported")
globalData.error_count += 1
for t in threads:
t.join()
destination_path = os.path.dirname(output_log) + "\\" + fileTitle
file_name = os.path.basename(output_log)
destination_file = os.path.join(destination_path, file_name)
wait_until_file_is_released(output_log)
duration = (datetime.now() - start_time).total_seconds()
if globalData.error_count == 0 :
log.info(f"All files processed successfully in {Colors.ENDC}{duration:.2f}{Colors.INFO} secondes, without error")
else :
log.error(f"There were {Colors.ENDC}{globalData.error_count}{Colors.ERROR} errors during {Colors.ENDC}{duration:.2f}{Colors.ERROR} secondes, check the log file: {Colors.ENDC}{os.path.basename(output_log)}")
wait_until_file_is_released(output_log)
release_log_file(log)
# Supprimer le fichier cible si il existe déjà
if os.path.isfile(destination_file):
os.remove(destination_file)
if not args.update :
shutil.move(output_log, destination_path)
if os.path.exists(fileTitle):
os.remove(fileTitle)
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